Mascot Search Results

User            : 
Email           : jpuddick@waikato.ac.nz
Search title    : 
Database        : NCBInr 20090725 (9330197 sequences; 3196564765 residues)
Taxonomy        : Bacteria (Eubacteria) (5010188 sequences)
Timestamp       : 30 Jul 2009 at 22:07:58 GMT
Top Score       : 150 for gi|442654, Chain A, The Contribution Of Buried Hydrogen Bonds To Protein Stability: The Crystal Structures Of Two Barnase Mutants

Probability Based Mowse Score

Protein score is -10*Log(P), where P is the probability that the observed match is a random event.
Protein scores greater than 80 are significant (p<0.05).

Score Distribution

Concise Protein Summary Report

Help
  Significance threshold p< Max. number of hits

  

1.    gi|442654    Mass: 12359    Score: 150    Expect: 5e-09  Queries matched: 10
 Chain A, The Contribution Of Buried Hydrogen Bonds To Protein Stability: The Crystal Structures Of Two Barnase Mutants
      gi|4139770    Mass: 12306    Score: 132    Expect: 3.2e-07  Queries matched: 9
 Chain A, Deletion Of A Buried Salt-Bridge In Barnase
      gi|230301    Mass: 12375    Score: 130    Expect: 5e-07  Queries matched: 9
 Chain A, Crystal Structure Of A Barnase-D(GpC) Complex At 1.9 Angstroms Resolution
      gi|493893    Mass: 12375    Score: 130    Expect: 5e-07  Queries matched: 9
 Chain L, Subsite Binding In An Rnase: Structure Of A Barnase- Tetranucleotide Complex At 1.76 Angstroms Resolution
      gi|493902    Mass: 12361    Score: 130    Expect: 5e-07  Queries matched: 9
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|1065209    Mass: 12333    Score: 130    Expect: 5e-07  Queries matched: 9
 Chain A, Barnase Mutant With Ile 76 Replaced By Ala
      gi|4139773    Mass: 12305    Score: 112    Expect: 3.2e-05  Queries matched: 7
 Chain A, Deletion Of A Buried Salt Bridge In Barnase
      gi|4139703    Mass: 12309    Score: 110    Expect: 5e-05  Queries matched: 8
 Chain A, Structural Response To Mutation At A Protein-Protein Interface
      gi|1065155    Mass: 12357    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Barnase S85cH102C DISULFIDE MUTANT
      gi|493908    Mass: 12361    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|1065216    Mass: 12333    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Barnase Mutant With Ile 88 Replaced By Ala
      gi|4139700    Mass: 12374    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Deletion Of A Buried Salt Bridge In Barnase
      gi|493905    Mass: 12361    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|442651    Mass: 12359    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, The Contribution Of Buried Hydrogen Bonds To Protein Stability: The Crystal Structures Of Two Barnase Mutants
      gi|1065224    Mass: 12333    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Barnase Mutant With Ile 96 Replaced By Ala
      gi|1065151    Mass: 12393    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Barnase T70cS92C DISULFIDE MUTANT
      gi|493911    Mass: 12361    Score: 110    Expect: 5e-05  Queries matched: 7
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|493899    Mass: 12361    Score: 110    Expect: 5e-05  Queries matched: 8
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|1065148    Mass: 12423    Score: 110    Expect: 5e-05  Queries matched: 8
 Chain A, Barnase A43cS80C DISULFIDE MUTANT
      gi|188595921    Mass: 12318    Score: 93     Expect: 0.0025  Queries matched: 6
 Chain A, Crystal Structural Analysis Of Barnase-Barstar Complex
      gi|576011    Mass: 12345    Score: 88     Expect: 0.0089  Queries matched: 7
 Chain A, Structural Studies Of Barnase Mutants
      gi|226887701    Mass: 12478    Score: 86     Expect: 0.014  Queries matched: 7
 Chain A, A Conformationally Strained, Circular Permutant Of Barnase
      gi|1065202    Mass: 12333    Score: 86     Expect: 0.014  Queries matched: 7
 Chain A, Barnase Mutant With Leu 14 Replaced By Ala
      gi|66360399    Mass: 12318    Score: 86     Expect: 0.014  Queries matched: 7
 Chain A, Water-Mediate Interaction At Aprotein-Protein Interface
      gi|253722854    Mass: 12415    Score: 86     Expect: 0.014  Queries matched: 7
 Chain A, Nmr Structure Of 15n-Labeled Barnase
      gi|576021    Mass: 12142    Score: 85     Expect: 0.014  Queries matched: 7
 Chain A, Crystallographic Analysis Of Phe->leu Substitution In The Hydrophobic Core Of Barnase
      gi|99032161    Mass: 12176    Score: 85     Expect: 0.014  Queries matched: 7
 Chain A, Barnase Cross-Linked With Glutaraldehyde
      gi|464661    Mass: 12374    Score: 83     Expect: 0.024  Queries matched: 7
 RecName: Full=Ribonuclease; AltName: Full=RNase Bci
      gi|133149    Mass: 17462    Score: 77     Expect: 0.1  Queries matched: 7
 RecName: Full=Ribonuclease; AltName: Full=Barnase; AltName: Full=RNase Ba; Flags: Precursor
      gi|551694    Mass: 16588    Score: 77     Expect: 0.11  Queries matched: 7
 barnase (RNase) precursor [Bacillus amyloliquefaciens]
      gi|154687594    Mass: 16654    Score: 76     Expect: 0.12  Queries matched: 7
 ribonuclease precursor (Barnase) [Bacillus amyloliquefaciens FZB42]
      gi|4139683    Mass: 12318    Score: 71     Expect: 0.39  Queries matched: 6
 Chain A, Structural Response To Mutation At A Protein-Protein Interface
      gi|452374    Mass: 12336    Score: 66     Expect: 1.3  Queries matched: 6
 ribonuclease [Bacillus circulans]
      gi|146319562    Mass: 4017     Score: 47     Expect: 1e+02  Queries matched: 3
 hypothetical protein SSU05_1908 [Streptococcus suis 05ZYH33]
      gi|21245021    Mass: 6537     Score: 46     Expect: 1.3e+02  Queries matched: 3
 phosphotransferase [Xanthomonas axonopodis pv. citri str. 306]
      gi|121594314    Mass: 25554    Score: 46     Expect: 1.3e+02  Queries matched: 4
 PAP2 (acid phosphatase) superfamily protein-like protein [Acidovorax sp. JS42]


2.    gi|171910872    Mass: 54830    Score: 57     Expect: 11  Queries matched: 6
 nitrogen regulation protein NR(I) [Verrucomicrobium spinosum DSM 4136]

3.    gi|16082861    Mass: 12429    Score: 51     Expect: 37  Queries matched: 4
 hypothetical protein YPMT1.69 [Yersinia pestis CO92]

4.    gi|46199784    Mass: 39766    Score: 51     Expect: 42  Queries matched: 5
 ABC transporter permease protein [Thermus thermophilus HB27]

5.    gi|229855041    Mass: 20350    Score: 50     Expect: 52  Queries matched: 4
 shikimate kinase [Streptosporangium roseum DSM 43021]

6.    gi|119962363    Mass: 36812    Score: 50     Expect: 56  Queries matched: 5
 vanillate O-demethylase oxygenase subunit B [Arthrobacter aurescens TC1]

7.    gi|15604581    Mass: 31824    Score: 49     Expect: 58  Queries matched: 5
 hypothetical protein RP747 [Rickettsia prowazekii str. Madrid E]

8.    gi|238059937    Mass: 14576    Score: 49     Expect: 66  Queries matched: 4
 conserved hypothetical protein [Micromonospora sp. ATCC 39149]

9.    gi|239996620    Mass: 16912    Score: 48     Expect: 71  Queries matched: 4
 Histone acetyltransferase HPA2/related acetyltransferase [Alteromonas macleodii ATCC 27126]

10.   gi|227871969    Mass: 17667    Score: 48     Expect: 78  Queries matched: 4
 possible dihydrofolate reductase [Oribacterium sinus F0268]

11.   gi|110834721    Mass: 40600    Score: 47     Expect: 1.1e+02  Queries matched: 6
 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. [Alcanivorax borkumensis SK2]
      gi|207110977    Mass: 6182     Score: 47     Expect: 1.1e+02  Queries matched: 3
 hypothetical protein HpylH_18109 [Helicobacter pylori HPKX_438_CA4C1]

12.   gi|163792658    Mass: 15103    Score: 46     Expect: 1.2e+02  Queries matched: 4
 heat shock protein, putative [alpha proteobacterium BAL199]

13.   gi|148557742    Mass: 42744    Score: 46     Expect: 1.4e+02  Queries matched: 5
 tetratricopeptide TPR_4 [Sphingomonas wittichii RW1]

14.   gi|221066457    Mass: 23523    Score: 45     Expect: 1.4e+02  Queries matched: 4
 Nucleoside-triphosphate--adenylate kinase [Comamonas testosteroni KF-1]

Search Parameters

Type of search         : Peptide Mass Fingerprint
Enzyme                 : Trypsin
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : ± 200 ppm
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 34
Selected for scoring   : 19

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