Mascot Search Results

User            : 
Email           : ade2@waikato.ac.nz
Search title    : 
Database        : NCBInr 20090704 (9251875 sequences; 3169794832 residues)
Taxonomy        : Bacteria (Eubacteria) (4922962 sequences)
Timestamp       : 10 Jul 2009 at 01:32:47 GMT
Top Score       : 155 for Mixture 1, gi|4139703 + gi|241893424

Probability Based Mowse Score

Protein score is -10*Log(P), where P is the probability that the observed match is a random event.
Protein scores greater than 79 are significant (p<0.05).

Score Distribution

Concise Protein Summary Report

Help
  Significance threshold p< Max. number of hits

  

1.    Mixture 1    Total score: 155    Expect: 1.6e-09  Queries matched: 11
 Components (only one family member shown for each component):
      gi|4139703    Mass: 12309    Score: 75     Expect: 0.15  Queries matched: 6
 Chain A, Structural Response To Mutation At A Protein-Protein Interface
      gi|241893424    Mass: 10882    Score: 75     Expect: 0.17  Queries matched: 5
 possible beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]


2.    gi|493908    Mass: 12361    Score: 115    Expect: 1.6e-05  Queries matched: 8
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|493905    Mass: 12361    Score: 115    Expect: 1.6e-05  Queries matched: 8
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|493911    Mass: 12361    Score: 115    Expect: 1.6e-05  Queries matched: 8
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|4139773    Mass: 12305    Score: 97     Expect: 0.0011  Queries matched: 7
 Chain A, Deletion Of A Buried Salt Bridge In Barnase
      gi|4139770    Mass: 12306    Score: 97     Expect: 0.0011  Queries matched: 7
 Chain A, Deletion Of A Buried Salt-Bridge In Barnase
      gi|230301    Mass: 12375    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain A, Crystal Structure Of A Barnase-D(GpC) Complex At 1.9 Angstroms Resolution
      gi|493893    Mass: 12375    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain L, Subsite Binding In An Rnase: Structure Of A Barnase- Tetranucleotide Complex At 1.76 Angstroms Resolution
      gi|1065216    Mass: 12333    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain A, Barnase Mutant With Ile 88 Replaced By Ala
      gi|4139700    Mass: 12374    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain A, Deletion Of A Buried Salt Bridge In Barnase
      gi|442651    Mass: 12359    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain A, The Contribution Of Buried Hydrogen Bonds To Protein Stability: The Crystal Structures Of Two Barnase Mutants
      gi|1065224    Mass: 12333    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain A, Barnase Mutant With Ile 96 Replaced By Ala
      gi|1065151    Mass: 12393    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain A, Barnase T70cS92C DISULFIDE MUTANT
      gi|157830405    Mass: 12330    Score: 94     Expect: 0.0018  Queries matched: 7
 Chain A, Barnase
      gi|188595921    Mass: 12318    Score: 77     Expect: 0.096  Queries matched: 6
 Chain A, Crystal Structural Analysis Of Barnase-Barstar Complex
      gi|576011    Mass: 12345    Score: 75     Expect: 0.14  Queries matched: 5
 Chain A, Structural Studies Of Barnase Mutants
      gi|4139703    Mass: 12309    Score: 75     Expect: 0.15  Queries matched: 6
 Chain A, Structural Response To Mutation At A Protein-Protein Interface
      gi|1065155    Mass: 12357    Score: 75     Expect: 0.15  Queries matched: 6
 Chain A, Barnase S85cH102C DISULFIDE MUTANT
      gi|442654    Mass: 12359    Score: 75     Expect: 0.16  Queries matched: 6
 Chain A, The Contribution Of Buried Hydrogen Bonds To Protein Stability: The Crystal Structures Of Two Barnase Mutants
      gi|493902    Mass: 12361    Score: 75     Expect: 0.16  Queries matched: 6
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|1065209    Mass: 12333    Score: 75     Expect: 0.16  Queries matched: 6
 Chain A, Barnase Mutant With Ile 76 Replaced By Ala
      gi|1065148    Mass: 12423    Score: 75     Expect: 0.16  Queries matched: 6
 Chain A, Barnase A43cS80C DISULFIDE MUTANT
      gi|493899    Mass: 12361    Score: 75     Expect: 0.16  Queries matched: 6
 Chain A, Crystal Structural Analysis Of Mutations In The Hydrophobic Cores Of Barnase
      gi|226887701    Mass: 12478    Score: 74     Expect: 0.22  Queries matched: 5
 Chain A, A Conformationally Strained, Circular Permutant Of Barnase
      gi|1065202    Mass: 12333    Score: 73     Expect: 0.23  Queries matched: 5
 Chain A, Barnase Mutant With Leu 14 Replaced By Ala
      gi|66360399    Mass: 12318    Score: 73     Expect: 0.23  Queries matched: 5
 Chain A, Water-Mediate Interaction At Aprotein-Protein Interface
      gi|157876435    Mass: 12370    Score: 73     Expect: 0.23  Queries matched: 5
 Chain A, Nmr Structure Of 15n-Labeled Barnase
      gi|576021    Mass: 12142    Score: 73     Expect: 0.23  Queries matched: 5
 Chain A, Crystallographic Analysis Of Phe->leu Substitution In The Hydrophobic Core Of Barnase
      gi|99032161    Mass: 12176    Score: 73     Expect: 0.23  Queries matched: 5
 Chain A, Barnase Cross-Linked With Glutaraldehyde
      gi|464661    Mass: 12374    Score: 72     Expect: 0.35  Queries matched: 5
 RecName: Full=Ribonuclease; AltName: Full=RNase Bci
      gi|133149    Mass: 17462    Score: 66     Expect: 1.2  Queries matched: 5
 RecName: Full=Ribonuclease; AltName: Full=Barnase; AltName: Full=RNase Ba; Flags: Precursor
      gi|551694    Mass: 16588    Score: 66     Expect: 1.3  Queries matched: 5
 barnase (RNase) precursor [Bacillus amyloliquefaciens]
      gi|154687594    Mass: 16654    Score: 66     Expect: 1.4  Queries matched: 5
 ribonuclease precursor (Barnase) [Bacillus amyloliquefaciens FZB42]
      gi|4139683    Mass: 12318    Score: 58     Expect: 7.5  Queries matched: 4
 Chain A, Structural Response To Mutation At A Protein-Protein Interface

3.    gi|241893424    Mass: 10882    Score: 75     Expect: 0.17  Queries matched: 5
 possible beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]

4.    gi|52141669    Mass: 63153    Score: 71     Expect: 0.39  Queries matched: 7
 prolyl-tRNA synthetase [Bacillus cereus E33L]
      gi|229157395    Mass: 63069    Score: 71     Expect: 0.39  Queries matched: 7
 Prolyl-tRNA synthetase [Bacillus cereus ATCC 4342]
      gi|30263823    Mass: 63139    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus anthracis str. Ames]
      gi|75760863    Mass: 63085    Score: 57     Expect: 10  Queries matched: 6
 Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis ATCC 35646]
      gi|30021908    Mass: 63150    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
      gi|42782910    Mass: 63082    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
      gi|49481697    Mass: 63153    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str. 97-27]
      gi|196036918    Mass: 63155    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus cereus W]
      gi|218235963    Mass: 62995    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus cereus B4264]
      gi|206972654    Mass: 62979    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus cereus AH1134]
      gi|222097264    Mass: 63105    Score: 57     Expect: 10  Queries matched: 6
 prolyl-tRNA synthetase [Bacillus cereus Q1]
      gi|229197929    Mass: 63140    Score: 57     Expect: 10  Queries matched: 6
 Prolyl-tRNA synthetase [Bacillus cereus m1293]
      gi|229047505    Mass: 63009    Score: 57     Expect: 10  Queries matched: 6
 Prolyl-tRNA synthetase [Bacillus cereus AH676]

5.    gi|238757144    Mass: 21557    Score: 66     Expect: 1.1  Queries matched: 5
 Precorrin-6Y C5,15-methyltransferase [decarboxylating] [Yersinia aldovae ATCC 35236]

6.    gi|189347724    Mass: 33185    Score: 65     Expect: 1.6  Queries matched: 6
 Lytic transglycosylase catalytic [Chlorobium limicola DSM 245]

7.    gi|84500313    Mass: 63401    Score: 58     Expect: 8  Queries matched: 6
 cobalamin biosynthesis precorrin-3 methylase [Oceanicola batsensis HTCC2597]

Search Parameters

Type of search         : Peptide Mass Fingerprint
Enzyme                 : Trypsin
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : ± 200 ppm
Peptide Charge State   : 1+
Max Missed Cleavages   : 1
Number of queries      : 27
Selected for scoring   : 15

Mascot:  http://www.matrixscience.com/