Tauranga Harbour is a mesotidal lagoon located within the Bay of Plenty, New Zealand, and is subject to an ongoing maintenance dredging program to remove mud deposits coming from various sources in the catchment. At the southern end of the commercial port, the Tauranga Bridge Marina was built adjacent to the bridge causeway, with 500 floating concrete berths, enclosed by concrete floating breakwaters. It is proposed to convert these floating breakwaters into solid ones to stop waves entering the marina. This is expected to influence tidal circulation around the Tauranga bridge causeway, and potentially affect sedimentation and marine habitats. The region is an important source of "kai moana" (seafood) for local iwi, and is a source of juvenile shellfish for the large beds located on the flood tidal delta and surrounding channels. This study investigates the impact of the successive harbour constructions on the local sedimentology. The overall goal of the mapping part of this project is to identify and locate the different seabed facies and features within the study site, which may be affected by the sediment transport potentially resulting from the past and future harbour developments. To investigate the impacts of the harbour modifications, a habitat-mapping survey using acoustic mapping techniques was undertaken in July and August 2011. The hydrographic survey was simultaneously performed using a multibeam echosounder (Kongsberg-Simrad EM3000) and a Starfish 452F sidescan sonar. The backscatter/imagery data from both systems was then used for habitat mapping, using a combination of Angular Response Analysis and image-based segmentation. An underwater camera survey and seabed sampling were also performed to ground-truth the morphologies identified from the acoustic backscatter analysis. The most recent habitat map was then compared to the previous studies to identify changes in response to the different modifications of the estuary.