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Diversity of New Zealand Deep-sea Amphipoda

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dc.contributor.advisor Hogg, Ian D.
dc.contributor.advisor Pilditch, Conrad A.
dc.contributor.advisor Lörz, Anne-Nina Knox, Matthew Andrew 2012-11-30T02:27:41Z 2012-11-30T02:27:41Z 2012
dc.identifier.citation Knox, M. A. (2012). Diversity of New Zealand Deep-sea Amphipoda (Thesis, Doctor of Philosophy (PhD)). University of Waikato. Retrieved from en
dc.description.abstract Biodiversity and the ecological and evolutionary processes which influence faunal distributions are poorly understood in deep-sea habitats. This thesis assesses diversity of deep-sea amphipod crustaceans at three taxonomic levels (family, species, genetic) on continental margins of New Zealand relative to environmental variables. Sampling was undertaken at 20 stations located on Chatham Rise and Challenger Plateau, two major geomorphic features with contrasting environmental conditions. In Chapter 1, total diversity of the >12,500 amphipods assessed at the family-level revealed high abundance (range: 44 – 2074 individuals 1000 m⁻²) and taxonomic richness (27 families). Amphipod assemblages at all stations were largely dominated by the same families. Chatham Rise stations were mostly similar in family composition to one another and to the two closest Challenger Plateau stations. Overall, amphipod community composition correlated most strongly with surface chlorophyll a, suggesting strong benthic-pelagic coupling. In Chapter 2, I used molecular methods (COI DNA sequence thresholds of 6%) to estimate species diversity in the dominant amphipod family identified from Chapter 1 - the Phoxocephalidae. Analyses revealed 49 putative species-level taxa, which greatly exceeds the current number (n=17) of formally described New Zealand phoxocephalid species. A cluster of stations with highly similar taxa was identified, broadly distributed over the crest of the Chatham Rise, in association with elevated food availability. Similar to the family-level analyses of Chapter 1 multivariate analysis of phoxocephalid assemblages and environmental parameters revealed a strong correlation with measures of food supply. Analyses of inter-station assemblages revealed a major split between regions, indicating minimal overlap in taxon distributions on eastern and western continental margins. Chapter 3 examined genetic connectivity among deep-sea habitats. A phylogenetic analyses of three relatively abundant and widespread taxa; cf. Ampelisca chiltoni, cf. Oediceroides apicalis and Phoxocephalidae sp., was combined with available genetic data from a further 61 taxa collected from the same stations, to examine mean levels of inter-station genetic divergences. Nearly identical levels of genetic divergence were found between eastern and western regions for all three taxa. Furthermore, inter-station analysis of the wider amphipod community revealed similar patterns of genetic structure in most taxa. Based on molecular clock estimates, genetic divergences most likely corresponded to isolation following landmass changes during the Pleistocene. This thesis research has revealed a biodiversity hotspot on New Zealand continental margins. I conclude that Cook Strait and the subtropical front are important structures responsible for shaping benthic communities on New Zealand continental margins and that vicariance is likely to have played an important role in the evolutionary radiation of the New Zealand deep-sea fauna.
dc.format.mimetype application/pdf
dc.language.iso en
dc.publisher University of Waikato
dc.rights All items in Research Commons are provided for private study and research purposes and are protected by copyright with all rights reserved unless otherwise indicated.
dc.subject Challenger Plateau
dc.subject Chatham Rise
dc.subject Subtropical Front
dc.subject Phoxocephalidae
dc.subject Amphipoda
dc.subject DNA Barcoding
dc.subject Biodiversity
dc.subject Genetic connectivity
dc.subject Evolution
dc.subject Continental shelf
dc.title Diversity of New Zealand Deep-sea Amphipoda en
dc.type Thesis University of Waikato Doctoral Doctor of Philosophy (PhD) 2012-11-27T22:33:04Z

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