Item

Orienting a protein model by crossing number to generate the characteristic views for identification

Abstract
A protein model (such as a ribbon model) can be created from the atomic coordinates in the protein data base files. These coordinates are obtained by X-ray crystallography or NMR spectroscopy with the protein arbitrarily oriented. As such, identifying or comparing a novel structure with a known item using protein model in the protein data base can be a timely process since a large number of transformations may be involved. The identification efficiency will be improved if the protein models are uniformly oriented. This paper presents an approach to orient a protein model to generate the characteristic views with minimum and maximum crossings respectively. The projection directions for these characteristic views are determined by a set of crossing maps (C-maps). Re-orientating the protein models in the protein data base to two characteristic views will facilitate the process of identification.
Type
Journal Article
Type of thesis
Series
Citation
Au, C.K., Cai, Y., Zheng, J., & Woo, T. (2010). Orienting a protein model by crossing number to generate the characteristic views for identification. Computer Modeling in Engineering & Sciences, 68(3), 221-237.
Date
2010
Publisher
Tech Science Press
Degree
Supervisors
Rights
Publisher version