dc.contributor.author | Au, Chi Kit | |
dc.contributor.author | Cai, Yiyu | |
dc.contributor.author | Zheng, Jianmin | |
dc.contributor.author | Woo, Tony | |
dc.date.accessioned | 2013-03-12T20:23:37Z | |
dc.date.available | 2013-03-12T20:23:37Z | |
dc.date.issued | 2010 | |
dc.identifier.citation | Au, C.K., Cai, Y., Zheng, J., & Woo, T. (2010). Orienting a protein model by crossing number to generate the characteristic views for identification. Computer Modeling in Engineering & Sciences, 68(3), 221-237. | en_NZ |
dc.identifier.issn | 1526-1492 | |
dc.identifier.uri | https://hdl.handle.net/10289/7346 | |
dc.description.abstract | A protein model (such as a ribbon model) can be created from the atomic coordinates in the protein data base files. These coordinates are obtained by X-ray crystallography or NMR spectroscopy with the protein arbitrarily oriented. As such, identifying or comparing a novel structure with a known item using protein model in the protein data base can be a timely process since a large number of transformations may be involved. The identification efficiency will be improved if the protein models are uniformly oriented. This paper presents an approach to orient a protein model to generate the characteristic views with minimum and maximum crossings respectively. The projection directions for these characteristic views are determined by a set of crossing maps (C-maps). Re-orientating the protein models in the protein data base to two characteristic views will facilitate the process of identification. | en_NZ |
dc.language.iso | en | |
dc.publisher | Tech Science Press | en_NZ |
dc.subject | Characteristic views | en_NZ |
dc.subject | crossing | en_NZ |
dc.subject | projection | en_NZ |
dc.subject | C-map | en_NZ |
dc.subject | spherical polygons | en_NZ |
dc.title | Orienting a protein model by crossing number to generate the characteristic views for identification | en_NZ |
dc.type | Journal Article | en_NZ |
dc.identifier.doi | 10.3970/cmes.2010.068.221 | en_NZ |
dc.relation.isPartOf | Computer Modeling in Engineering & Sciences | en_NZ |
pubs.begin-page | 221 | en_NZ |
pubs.elements-id | 37001 | |
pubs.end-page | 237 | en_NZ |
pubs.issue | 3 | en_NZ |
pubs.volume | 68 | en_NZ |