Orienting a protein model by crossing number to generate the characteristic views for identification

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dc.contributor.authorAu, Chi Kit
dc.contributor.authorCai, Yiyu
dc.contributor.authorZheng, Jianmin
dc.contributor.authorWoo, Tony
dc.date.accessioned2013-03-12T20:23:37Z
dc.date.available2013-03-12T20:23:37Z
dc.date.issued2010
dc.description.abstractA protein model (such as a ribbon model) can be created from the atomic coordinates in the protein data base files. These coordinates are obtained by X-ray crystallography or NMR spectroscopy with the protein arbitrarily oriented. As such, identifying or comparing a novel structure with a known item using protein model in the protein data base can be a timely process since a large number of transformations may be involved. The identification efficiency will be improved if the protein models are uniformly oriented. This paper presents an approach to orient a protein model to generate the characteristic views with minimum and maximum crossings respectively. The projection directions for these characteristic views are determined by a set of crossing maps (C-maps). Re-orientating the protein models in the protein data base to two characteristic views will facilitate the process of identification.en_NZ
dc.identifier.citationAu, C.K., Cai, Y., Zheng, J., & Woo, T. (2010). Orienting a protein model by crossing number to generate the characteristic views for identification. Computer Modeling in Engineering & Sciences, 68(3), 221-237.en_NZ
dc.identifier.doi10.3970/cmes.2010.068.221en_NZ
dc.identifier.issn1526-1492
dc.identifier.urihttps://hdl.handle.net/10289/7346
dc.language.isoen
dc.publisherTech Science Pressen_NZ
dc.relation.isPartOfComputer Modeling in Engineering & Sciencesen_NZ
dc.subjectCharacteristic viewsen_NZ
dc.subjectcrossingen_NZ
dc.subjectprojectionen_NZ
dc.subjectC-mapen_NZ
dc.subjectspherical polygonsen_NZ
dc.titleOrienting a protein model by crossing number to generate the characteristic views for identificationen_NZ
dc.typeJournal Articleen_NZ
pubs.begin-page221en_NZ
pubs.elements-id37001
pubs.end-page237en_NZ
pubs.issue3en_NZ
pubs.volume68en_NZ
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